GgaEX0027915 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79194009-79206221:+
Coord C1 exon
chr1:79194009-79194130
Coord A exon
chr1:79195389-79195443
Coord C2 exon
chr1:79206007-79206221
Length
55 bp
Sequences
Splice sites
3' ss Seq
TACTATTGAATGCTCAACAGCCA
3' ss Score
3.32
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGTTCACGAACATCACTCTCAGCACAGAGGCCATTGCCACCAAAGAGCTCTGTGGCAAAGAGATACCATTTGTCCCAAACCAAGGACAGAAAGATACAATCACCAAACTCCTTTTAGTCCGG
Seq A exon
CCAGAGGGAGTGCTAATAGAAAAGGCTCACAGTTCCATCCTGTGTCCCAAGAAAG
Seq C2 exon
GTGGGCAGATCCATTGGAGTCAGACCCCATCCAAGGCACACAGCACTAGCCTTTGGTCACAGCCACTGTCTGTGGATGTGGAGTTAACAGCTTATGTCCTCCTGGCCCTGCTCTCCAAGCCAAATGTCACAGAGGCTGACTTCACCATAGCCTCTGGCATTGTGGCGTGGCTCACCAGACAGCAAAATGCCTATGGAGGATTTGCCTCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-17/25=16-24
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=PU(32.3=52.6)
C2:
PF076789=A2M_comp=PD(15.4=52.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCACCAAAGAGCTCTGTG
R:
ACCAAAGGCTAGTGCTGTGTG
Band lengths:
146-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]