BtaEX6024160 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101516873-101518446:-
Coord C1 exon
chr5:101518325-101518446
Coord A exon
chr5:101517317-101517368
Coord C2 exon
chr5:101516873-101516956
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTCTTTTCCTGTCAGCCG
3' ss Score
7.92
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTCATGTAAACTTCACTATCAGCACAAAGATTCTGAACAGCAATGAACTCTGTGGGGGCCAGAAGGCGTTTGTTCCCCTAAAGGGTGGGAGTGACACACTCATCAAACCAGTTCTGGTCAAG
Seq A exon
CCGGAAGGAGTCCTTGTGGAGAAGACACACAGCTCACTGCTGTGCCCAAAAG
Seq C2 exon
GAAAAGTGGCTTCAGAATCTATCTCCCTGGAGGTCCCTGTGGATGTTGTTCCTGATTCAGCCAGGGCTTATGTTGCTGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGTTTGTTCCCCTAAAGG
R:
AACAGCAACATAAGCCCTGGC
Band lengths:
139-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]