GgaEX1003075 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:75616832-75617500:+
Coord C1 exon
chr1:75616832-75616892
Coord A exon
chr1:75617057-75617108
Coord C2 exon
chr1:75617417-75617500
Length
52 bp
Sequences
Splice sites
3' ss Seq
TACTCTTTCTCCACCTGCAGCCA
3' ss Score
9.39
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGTTGCTGTGACCCCATTGCAAGGAAAGATGGACACAGTGATAAAACCTTTGCTTGTGAAG
Seq A exon
CCAGGAGGCATACTACAAGAGAAGACCCAAAACGCCTTTCTCTGTGCTACAG
Seq C2 exon
ATAACACAGTCTCTGAAGAATTCTCCCTGACCCTGCCTGCAGAAACGCTGGAGGGATCTGGTCGAGCCACTTTCTCTGTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252-'55-50,'55-47,56-50
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACCCCATTGCAAGGAA
R:
CACAGAGAAAGTGGCTCGACC
Band lengths:
136-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]