HsaEX6065035 @ hg38
Exon Skipping
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr12:8854128-8855592:+
Coord C1 exon
chr12:8854128-8854249
Coord A exon
chr12:8854780-8854831
Coord C2 exon
chr12:8855509-8855592
Length
52 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTCTTCATCGCAGCCT
3' ss Score
9.14
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTCACATTAACTTTACTATTAGTACAAAGATTCTGGACAGCAATGAACCATGTGGGGGCCAGAAGGGGTTTGTTCCCCAAAAGGGCCGAAGTGACACGCTCATCAAGCCAGTTCTCGTCAAA
Seq A exon
CCTGAGGGAGTCCTGGTGGAGAAGACACACAGCTCATTGCTGTGCCCAAAAG
Seq C2 exon
GAAAGGTGGCATCTGAATCTGTCTCCCTGGAGCTCCCAGTGGACATTGTTCCTGACTCGACCAAGGCTTATGTTACGGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAATGAACCATGTGGGG
R:
GGAACAATGTCCACTGGGAGC
Band lengths:
138-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains