GgaINT0121130 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79201232-79201679:+
Coord C1 exon
chr1:79201232-79201408
Coord A exon
chr1:79201409-79201597
Coord C2 exon
chr1:79201598-79201679
Length
189 bp
Sequences
Splice sites
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
3' ss Seq
CATCCTAAACTACTTCTCAGGGT
3' ss Score
4.82
Exon sequences
Seq C1 exon
GTGACCTCATGGGGACAGCACTGCAAAACTTGGACCACCTGGTGCAGATGCCCCATGGCTGTGGGGAGCAGAACATGGTACTGTTTGCCCCCATTGTCTATATGCTGCAGTACCTGGAGAAGACAAGGCAGCTGACTCCTGAGATTAAGGAGAGGGCAACAGGATTCTTGCGCAATG
Seq A exon
GCAAGTACAACAGATCCACCTTATTCTTCTGCCTTTCCCTGTGCTCAAACTAGTAACAGTCACTAGTGCCTACACTCCTTATTCTCTGAGTACTCCATGGCTTTTAATGTTAACAACACTCCCTTTCCCTGCCCAACGATCTCTTTGAAAATACCAGTCTGAACACTGTCATCCTAAACTACTTCTCAG
Seq C2 exon
GGTATCAGATACAGCTGCAGTATCAACATCCTGATGGTTCTTTCAGTGAATTTGGTACCAAGGATGAGTACGGTAATACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
NA
C2:
PF076789=A2M_comp=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGACAGCACTGCAAAAC
R:
ACCGTACTCATCCTTGGTACCA
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]