GgaEX0025942 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79200736-79205411:+
Coord C1 exon
chr1:79200736-79200819
Coord A exon
chr1:79201232-79201408
Coord C2 exon
chr1:79205249-79205411
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTGCCTATGTTCTGTCCCAGGTG
3' ss Score
9.12
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GGAGTCCAGCAGAGGAGTCTGTGTCCTTAACGTTGCCTCCAAATACGGTTGAAGGTTCAGTGAGAGCTACTGTCTCAGTCACTG
Seq A exon
GTGACCTCATGGGGACAGCACTGCAAAACTTGGACCACCTGGTGCAGATGCCCCATGGCTGTGGGGAGCAGAACATGGTACTGTTTGCCCCCATTGTCTATATGCTGCAGTACCTGGAGAAGACAAGGCAGCTGACTCCTGAGATTAAGGAGAGGGCAACAGGATTCTTGCGCAATG
Seq C2 exon
AGTACAGTGGTGCGCAAGGCTCTGGGGTGTATCATTCCTTCCCTTCCCAAAGCTACCAGCACTTACACACAGGCCCTGCTGGCCTACACCTTTGCCCTGGCTAAGGATCCTCAGCGCACACAAGAGCTTCTTGACATACTTGATGAAAAGGCAATCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-19/25=18-23
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=PD(64.5=69.0)
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(22.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCAGCAGAGGAGT
R:
TGCTCTGATTGCCTTTTCATCA
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]