BtaEX6024162 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101513575-101516956:-
Coord C1 exon
chr5:101516873-101516956
Coord A exon
chr5:101513821-101513997
Coord C2 exon
chr5:101513575-101513656
Length
177 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTTTTGGACCCCAGGAG
3' ss Score
7.66
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GAAAAGTGGCTTCAGAATCTATCTCCCTGGAGGTCCCTGTGGATGTTGTTCCTGATTCAGCCAGGGCTTATGTTGCTGTTCTGG
Seq A exon
GAGACATCATGGGCACAGCCCTGCAGAACCTGGACAACTTGGTGCAGATGCCAAGGGGCTGTGGGGAGCAGAACATGGTCTTGTTCGCACCTATCATTTACGTCCTGCAGTACCTGGAGAAGACAGAGCTGCTGACGGAGGAAATCTGGTCTCGAGCAGTGGGCTTCCTGAAGCTGG
Seq C2 exon
GGTACCAGAGGGAACTGATGTACAAACACAGTAATGGCTCCTACAGTGCCTTTGGGGAGCAAGATGGAAATGGAAACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'22-25,'22-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.6=1.7)
C2:
PF076789=A2M_comp=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTTCAGAATCTATCTCCCT
R:
CATGTGTTTCCATTTCCATCTTGCT
Band lengths:
162-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]