GgaEX0025942 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75556131-75557110:+
Coord C1 exon
chr1:75556131-75556231
Coord A exon
chr1:75556644-75556820
Coord C2 exon
chr1:75557010-75557110
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTGCCTATGTTCTGTCCCAGGTG
3' ss Score
9.12
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
ACACCCTCTGGTATCAGGGAGTCCAGCAGAGGAGTCTGTGTCCTTAACGTTGCCTCCAAATACGGTTGAAGGTTCAGTGAGAGCTACTGTCTCAGTCACTG
Seq A exon
GTGACCTCATGGGGACAGCACTGCAAAACTTGGACCACCTGGTGCAGATGCCCCATGGCTGTGGGGAGCAGAACATGGTACTGTTTGCCCCCATTGTCTATATGCTGCAGTACCTGGAGAAGACAAGGCAGCTGACTCCTGAGATTAAGGAGAGGGCAACAGGATTCTTGCGCAATG
Seq C2 exon
GGTATCAGATACAGCTGCAGTATCAACATCCTGATGGTTCTTTCAGTGAATTTGGTACCAAGGATGAGTACGGTAATACTTGGTAAGCCTTAGTAATACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'43-39,'43-38,44-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTCTGGTATCAGGGAGT
R:
ACTAAGGCTTACCAAGTATTACCGT
Band lengths:
194-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]