GgaINT0121131 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79201598-79202209:+
Coord C1 exon
chr1:79201598-79201679
Coord A exon
chr1:79201680-79202052
Coord C2 exon
chr1:79202053-79202209
Length
373 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TCTGCTCTCTCCCCAATCAGGCT
3' ss Score
9.77
Exon sequences
Seq C1 exon
GGTATCAGATACAGCTGCAGTATCAACATCCTGATGGTTCTTTCAGTGAATTTGGTACCAAGGATGAGTACGGTAATACTTG
Seq A exon
GTAAGCCTTAGTAATACTTGGTAAGTTCTCTCCTTTCTGTCCTCCTGCTGTCTGTCCGACAGCTTTCTGTTTCCAGTATGGAATCCCCTTTTGTCCTATTGGACACAGAATGTTCCAAATGTTTTTTGTGCAACCCATCAATATCTAACTACTTCTGAGATGAAGGATGACACTGAACTGACAAACTCGGAATAGCCCAACAGTAGGTGAGGAGGGACCTGAAGGTTTCAAGTTCCCACTTTTATTCGTTTTCCTCATTTACTGCTTATTTTCTTTCTTTTCACTTATTCTTCCCGCTTACTCATTCACTCAATCTCTTTCTGTTCCTTTTTTCCCTCTCTCATGCCTTTTTTTCTGCTCTCTCCCCAATCAG
Seq C2 exon
GCTGACTGCATTTGTGGTCAAATGCTTTGCCCAAGCCAAGCCATACATTTTCCTGGACGACAGGAGCATTCAAGCTGCTTTCAATTGGCTGGAGTTCCACCAGCTTCCGAATGGCTGCTTCAGGGATGTGGGCCAACTTTTCCACACAGCCATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.0=100)
A:
NA
C2:
PF076789=A2M_comp=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCAGATACAGCTGCAGT
R:
TTCATGGCTGTGTGGAAAAGT
Band lengths:
238-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]