DreINT0000085 @ danRer10
Intron Retention
Gene
ENSDARG00000041685 | A2ML1 (3 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21288181-21288494:-
Coord C1 exon
chr15:21288419-21288494
Coord A exon
chr15:21288338-21288418
Coord C2 exon
chr15:21288181-21288337
Length
81 bp
Sequences
Splice sites
5' ss Seq
GTGGTATAT
5' ss Score
2.63
3' ss Seq
TTAAACTTTAACACAACCAGGTT
3' ss Score
3.98
Exon sequences
Seq C1 exon
GATACCAGAGACAACTGAACTACAAGCATTTTGATGGGGCTTACAGCACATTTGGTTATGGTGATGGGAATACGTG
Seq A exon
GTATATATATTTTCACTCTTTTGTTAAAAAGAAATAATGTCAAGGAGTTATTCTTAATAGTTTAAACTTTAACACAACCAG
Seq C2 exon
GTTGACTGCCTTTGTCCTGAAGTCTTTTGGCAAAGCTCAAAAATACACATTTATTGATCCACAAATTATTCAGAGTGCAAAGGATTGGTTAATAAGCAGACGGAATTCAGACGGCTGTTTTATCCAACAGGGAAGACTGTTTAACAACAGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041685:ENSDART00000155787:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.5=100)
A:
NA
C2:
PF076789=A2M_comp=FE(21.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTTGATGGGGCTTACAGC
R:
AACAGCCGTCTGAATTCCGTC
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]