GgaEX0025946 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79201598-79202209:+
Coord C1 exon
chr1:79201598-79201679
Coord A exon
chr1:79201756-79201885
Coord C2 exon
chr1:79202053-79202209
Length
130 bp
Sequences
Splice sites
3' ss Seq
CGACAGCTTTCTGTTTCCAGTAT
3' ss Score
4.98
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GGTATCAGATACAGCTGCAGTATCAACATCCTGATGGTTCTTTCAGTGAATTTGGTACCAAGGATGAGTACGGTAATACTTG
Seq A exon
TATGGAATCCCCTTTTGTCCTATTGGACACAGAATGTTCCAAATGTTTTTTGTGCAACCCATCAATATCTAACTACTTCTGAGATGAAGGATGACACTGAACTGACAAACTCGGAATAGCCCAACAGTAG
Seq C2 exon
GCTGACTGCATTTGTGGTCAAATGCTTTGCCCAAGCCAAGCCATACATTTTCCTGGACGACAGGAGCATTCAAGCTGCTTTCAATTGGCTGGAGTTCCACCAGCTTCCGAATGGCTGCTTCAGGGATGTGGGCCAACTTTTCCACACAGCCATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'30-30,'30-29,31-30
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.0=100)
A:
PF076789=A2M_comp=PD(19.4=25.0)
C2:
PF076789=A2M_comp=FE(21.1=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCAGATACAGCTGCAGT
R:
TGGCTGTGTGGAAAAGTTGGC
Band lengths:
234-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]