GgaINT0121132 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79202053-79202475:+
Coord C1 exon
chr1:79202053-79202209
Coord A exon
chr1:79202210-79202400
Coord C2 exon
chr1:79202401-79202475
Length
191 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGA
5' ss Score
3.63
3' ss Seq
GATATTTATGCTTTTTGTAGGGA
3' ss Score
6.43
Exon sequences
Seq C1 exon
GCTGACTGCATTTGTGGTCAAATGCTTTGCCCAAGCCAAGCCATACATTTTCCTGGACGACAGGAGCATTCAAGCTGCTTTCAATTGGCTGGAGTTCCACCAGCTTCCGAATGGCTGCTTCAGGGATGTGGGCCAACTTTTCCACACAGCCATGAAA
Seq A exon
GTAGGACCCAGAGAATTTTGAAAGGAAATTCAAAGCAGTTCTTGCCAATTGTAATTGTTTTAGCACACTTTTCTGTTATGTTCTGCTTTCTTGCATGGGAGAAAACCAGGGGTAGGTGTGATGTTTCCTGAATAGTTTCAGGTCTTTGTGTATCACCTTTCCCATCTTTTGGATATTTATGCTTTTTGTAG
Seq C2 exon
GGAGGTATGGATGGGGAAGTTCTCTTGGCTGCCTACATCACTGCTGCATACATGGAGAGAGGAGATACACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.1=100)
A:
NA
C2:
PF076789=A2M_comp=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACTGCATTTGTGGTCAA
R:
TCTGGTGTATCTCCTCTCTCCA
Band lengths:
231-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]