GgaEX0027916 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79202053-79205411:+
Coord C1 exon
chr1:79202053-79202209
Coord A exon
chr1:79202401-79202475
Coord C2 exon
chr1:79205249-79205411
Length
75 bp
Sequences
Splice sites
3' ss Seq
GATATTTATGCTTTTTGTAGGGA
3' ss Score
6.43
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GCTGACTGCATTTGTGGTCAAATGCTTTGCCCAAGCCAAGCCATACATTTTCCTGGACGACAGGAGCATTCAAGCTGCTTTCAATTGGCTGGAGTTCCACCAGCTTCCGAATGGCTGCTTCAGGGATGTGGGCCAACTTTTCCACACAGCCATGAAA
Seq A exon
GGAGGTATGGATGGGGAAGTTCTCTTGGCTGCCTACATCACTGCTGCATACATGGAGAGAGGAGATACACCAGAG
Seq C2 exon
AGTACAGTGGTGCGCAAGGCTCTGGGGTGTATCATTCCTTCCCTTCCCAAAGCTACCAGCACTTACACACAGGCCCTGCTGGCCTACACCTTTGCCCTGGCTAAGGATCCTCAGCGCACACAAGAGCTTCTTGACATACTTGATGAAAAGGCAATCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-22/25=21-23
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.1=100)
A:
PF076789=A2M_comp=FE(10.2=100)
C2:
PF076789=A2M_comp=FE(22.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCTGCTTCAGGGATGTG
R:
GTGTGCGCTGAGGATCCTTAG
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]