MmuEX6007285 @ mm10
Exon Skipping
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128489682-128490679:-
Coord C1 exon
chr6:128490523-128490679
Coord A exon
chr6:128490019-128490093
Coord C2 exon
chr6:128489682-128489859
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTCTGTCCCTTCCAGGGT
3' ss Score
12.33
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GCTCACTGCGTTTGTGCTCAAGGCCTTTGCTCAAGCTCAGTCGCACATCTTTATAGAGAAGACACACATCACAAATGCTTTCAACTGGCTCTCCATGAAACAAAAGGAGAATGGCTGTTTCCAACAGTCTGGATATCTGCTTAACAATGCGATGAAG
Seq A exon
GGTGGTGTGGATGATGAAGTGACTCTCTCTGCCTACATCACCATTGCTCTGCTGGAGATGCCTCTGCCTGTCACG
Seq C2 exon
CACAGTGCTGTGCGAAATGCTCTATTTTGCCTGGAAACGGCCTGGGCCTCCATCTCACAGAGCCAGGAAAGTCATGTCTATACCAAGGCATTGCTGGCCTATGCCTTCGCCCTGGCAGGAAACAAGGCCAAGAGAAGCGAACTGCTTGAATCCCTAAACAAAGATGCTGTGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-'42-41,'42-40,43-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(19.8=100)
A:
PF076789=A2M_comp=FE(9.1=100)
C2:
PF076789=A2M_comp=FE(22.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGCCTTTGCTCAAGCTC
R:
AGGCCGTTTCCAGGCAAAATA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types