RnoEX0071877 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161810887-161811976:-
Coord C1 exon
chr4:161811820-161811976
Coord A exon
chr4:161811340-161811414
Coord C2 exon
chr4:161810887-161811064
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTCCATTCTTCCAGGGT
3' ss Score
10.66
5' ss Seq
ACTGTGCGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GCTCACTGCATTTGTGCTCAAGGCCTTCGCTCAAGCTCAGTCATACATCTATATAGAAAAGACACACATCACAAATGCTTTCAATTGGCTCTCGATGAAACAAAGGGAGAACGGTTGTTTCCAACAGTCTGGATCCCTGCTCAACAATGCGATGAAG
Seq A exon
GGTGGTGTGGATGATGAAGTGACACTCTCTGCCTATATCACCATTGCTCTGCTGGAGATGCCCCTGCCTGTCACT
Seq C2 exon
CACAGTGTTGTTCGTAATGCTCTATTCTGCCTGGAAACGGCCTGGGCCTCCATCTCAAACAGCCAAGAAAGTCATGTCTACACAAAAGCACTGCTGGCCTATGCCTTTGCCCTGGCAGGAAACAGAGCCAAGCGAAGCGAGGTGCTTGAATCCCTAAACAAAGACGCTGTGAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'29-37,'29-36,30-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(19.5=100)
A:
PF076789=A2M_comp=FE(9.0=100)
C2:
PF076789=A2M_comp=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGGATCCCTGCTCAACA
R:
CTTCGCTTGGCTCTGTTTCCT
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]