BtaEX6024164 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101506891-101512798:-
Coord C1 exon
chr5:101512642-101512798
Coord A exon
chr5:101509838-101509912
Coord C2 exon
chr5:101506891-101507053
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCTTTCTCCTTCCAGGGT
3' ss Score
12.27
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCTGACAGCCTTTGTCACCAAATGCTTTGGCCAGGCTCGGCAATTCATCTTCATTGACGACAAGAACATCCAGGATGCTCTTGAGTGGATGGCAGGAAACCAGCTCTCCAGTGGCTGCTACGACAACGTGGGAAAGCTCCTTCAAACATCTATGAAG
Seq A exon
GGTGGAGTTGATGATGAGGTCTCCTTGACTGCCTACATTACAGCTGCATTGTTGGAAATGGGCAAGACCATAGAT
Seq C2 exon
GACCCAATGGTGAGTCAGGGGCTGCAGTGTGTCAAGAGTTCTGTTTCCTCTACCACCAACCTGTACACACAGGCCCTCCTTGCTTATACGTTCTCTCTGGCTGGAAACATGAACATCAGAAACATTCTTCTTGAAAAGCTAGATCAACAGGCTATTGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'26-29,'26-27,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(31.1=100)
A:
PF076789=A2M_comp=FE(14.4=100)
C2:
PF076789=A2M_comp=FE(32.3=100),PF076789=A2M_comp=PU(10.3=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCTCGGCAATTCATCTT
R:
AACTCTTGACACACTGCAGCC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]