MmuEX1013862 @ mm10
Exon Skipping
Gene
ENSMUSG00000108022 | Gm7298
Description
predicted gene 7298 [Source:MGI Symbol;Acc:MGI:3648717]
Coordinates
chr6:121780563-121781962:+
Coord C1 exon
chr6:121780563-121780719
Coord A exon
chr6:121780950-121781024
Coord C2 exon
chr6:121781782-121781962
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCACTCCTTCTTGTTTGCAGGGG
3' ss Score
9.36
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GCTCACAGCCTTTGTGCTCAAATCTTTTGCCCAAGCTCGAGCCTTCATCTTTATCGATGAATCACACATCACCCACTCCCTCACCTGGCTCTCCCAGCAGCAGAAGGACAATGGTTGCTTCCAGAGCTCTGGATCATTGTTCAACAATGCCATGAAG
Seq A exon
GGGGGAGTAGATGATGAAATGACACTCTCTGCCTACATAACCATGGCCCTTCTGGAAAGTTCACTCCCAGCCACA
Seq C2 exon
CATCCTGTTGTCTCCAAAGCCCTGAGCTGCCTGGAGTTATCCTGGAAGACCATAGAACAAGAACGAAATGCCAGCTTTGTGTACACCAAGGCTTTGATGGCCTATGCTTTCGCTCTGGTGGGGAACCAGGATAAGAGAGATGAAATCCTGAAGTCACTTGATGAGGAAGCTATAAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000108022_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(20.2=100)
A:
PF076789=A2M_comp=FE(9.3=100)
C2:
PF076789=A2M_comp=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTTGCCCAAGCTCGAGC
R:
AGGATAACTCCAGGCAGCTCA
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types