HsaEX1001195 @ hg38
Exon Skipping
Gene
ENSG00000175899 | A2M
Description
alpha-2-macroglobulin [Source:HGNC Symbol;Acc:HGNC:7]
Coordinates
chr12:9076756-9077857:-
Coord C1 exon
chr12:9077701-9077857
Coord A exon
chr12:9077346-9077420
Coord C2 exon
chr12:9076756-9076936
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCGTATTCACAGGGA
3' ss Score
9.94
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
Exon sequences
Seq C1 exon
GCTCACAGCCTTTGTTCTGAAGACTTTTGCCCAAGCTCGAGCCTACATCTTCATCGATGAAGCACACATTACCCAAGCCCTCATATGGCTCTCCCAGAGGCAGAAGGACAATGGCTGTTTCAGGAGCTCTGGGTCACTGCTCAACAATGCCATAAAG
Seq A exon
GGAGGAGTAGAAGATGAAGTGACCCTCTCCGCCTATATCACCATCGCCCTTCTGGAGATTCCTCTCACAGTCACT
Seq C2 exon
CACCCTGTTGTCCGCAATGCCCTGTTTTGCCTGGAGTCAGCCTGGAAGACAGCACAAGAAGGGGACCATGGCAGCCATGTATATACCAAAGCACTGCTGGCCTATGCTTTTGCCCTGGCAGGTAACCAGGACAAGAGGAAGGAAGTACTCAAGTCACTTAATGAGGAAGCTGTGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175899-'68-60,'68-59,70-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(20.2=100)
A:
PF076789=A2M_comp=FE(9.3=100)
C2:
PF076789=A2M_comp=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCAGGAGCTCTGGGTCA
R:
TCTTGTCCTGGTTACCTGCCA
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains