BtaEX6024102 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101332772-101334477:+
Coord C1 exon
chr5:101332772-101332928
Coord A exon
chr5:101333797-101333871
Coord C2 exon
chr5:101334297-101334477
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCTCATGTTTACAGGGT
3' ss Score
9.94
5' ss Seq
ACAGTACGT
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCTCACGGCCTTTGTACTGAAGAGTTTTGCCCAGGCTCGAGGCTATATCTTCATTGATGAAGCACATATTACTGAAGCTCTCACCTGGCTGGCCCAAAAGCAAAAGAGCAATGGCTGTTTCAGGAGTACTGGGACTCTGCTTAACAATGCCATCAAG
Seq A exon
GGTGGGGTGGACGATGAAGTGACCCTCTCTGCCTACATCACCATCGCCCTTCTAGAGATGCCTCTCCCTGTTACA
Seq C2 exon
CACCCTGTCGTCCGCAATGCCCTGTTCTGCCTGGACTCAGCCTGGAAGTCAGCCAAGGAAGGATCCCAAGGCAGCCACGTCTACACCAAGGCACTGTTGGCCTATGCCTTTGCCCTGGCGGGTAACCAGGAAAGGAGGACAGAGGTACTGACGTCACTGTATGAGGAAGCCGTGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'26-34,'26-33,27-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(20.2=100)
A:
PF076789=A2M_comp=FE(9.3=100)
C2:
PF076789=A2M_comp=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGTACTGGGACTCTGCT
R:
CCTCTGTCCTCCTTTCCTGGT
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]