MmuEX6006749 @ mm10
Exon Skipping
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121669512-121671082:+
Coord C1 exon
chr6:121669512-121669668
Coord A exon
chr6:121669936-121670010
Coord C2 exon
chr6:121670902-121671082
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTGCCCATTCACAGGGA
3' ss Score
8.49
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
Exon sequences
Seq C1 exon
GCTCACAGCCTTTGTACTGAAGAGTTTTGCTCAGGCTCGAAGATATATCTTCATCGATGAATCACACATCACCCAAGCCCTCACCTGGCTCTCCCAGCAGCAGAAGGACAATGGCTGCTTCAGGAGCTCCGGGTCACTGCTCAACAATGCCATGAAG
Seq A exon
GGAGGAGTAGAAGATGAAGTCACTTTGTCTGCCTACATCACCATTGCTCTCCTGGAGATGTCTCTTCCTGTCACT
Seq C2 exon
CATCCTGTTGTCCGAAATGCCCTCTTTTGCCTGGACACAGCCTGGAAGTCAGCGAGGAGAGGAGCCAGCGGCAACCATGTCTACACTAAGGCACTGTTGGCCTATGCATTTGCCCTTGCTGGTAACCAGGACACGAAGAAGGAGATACTGAAATCACTCGATGAGGAGGCGGTAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-'34-36,'34-34,35-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(20.2=100)
A:
PF076789=A2M_comp=FE(9.3=100)
C2:
PF076789=A2M_comp=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACAATGGCTGCTTCAGG
R:
CTGGTTACCAGCAAGGGCAAA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types