GgaEX1004307 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79360168-79361626:+
Coord C1 exon
chr1:79360168-79360324
Coord A exon
chr1:79360648-79360722
Coord C2 exon
chr1:79361461-79361626
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACTTTTATGTTTCCCCGCAGGGT
3' ss Score
13.37
5' ss Seq
ACTGTATGT
5' ss Score
5.19
Exon sequences
Seq C1 exon
GCTCACAGCCTTTGTCCTGAAGTCCTTTGCCCGGGCCCGGTCTCACATCTTCATAGATGAAAAGCACATCCAGGATGCTTTGATCTGGCTCAGTCAAAATCAGAAGGAGAATGGCTGCTTCCGCAGTTCTGGGGTGCTCCTGAACAATGCCATGAAG
Seq A exon
GGTGGAGTGAACGATGAGGTAACACTGACAGCCTACATCACTATCGCACTGCTGGAGATTCCTCTGCCTGTAACT
Seq C2 exon
CACTCGGTGGTGCGTAATGCTCTGTTCTGCCTGGAAACAGCAGGAAATGGGAAAGAAAATCACGTGTACACCAAGGCACTGCTGGCGTATGCCTTTGCCCTGGCAGGGAAGGAGGAGAAGCGGAAGGAGTTCCTCAGCTCACTTGAAAAGGAAGCCGTCAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'40-44,'40-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(20.7=100)
A:
PF076789=A2M_comp=FE(9.6=100)
C2:
PF076789=A2M_comp=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACAGCCTTTGTCCTGAA
R:
AACAGAGCATTACGCACCACC
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]