MmuEX0030209 @ mm10
Exon Skipping
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121880444-121881862:+
Coord C1 exon
chr6:121880444-121880600
Coord A exon
chr6:121880832-121880906
Coord C2 exon
chr6:121881682-121881862
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCACGCCTTCTTGTTTGCAGGGG
3' ss Score
9.07
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GCTCACAGCCTTTGTGCTCAAGTCTTTTGCCCAAGCTCGAGCCTTCATCTTCATCGATGAATCACACATCACCCATGCCTTCACCTGGCTCTCCCAAAAGCAGAAGGACAATGGCTGCTTCCGGAGCTCCGGATCATTGTTCAACAATGCCATGAAG
Seq A exon
GGGGGAGTAGATGATGAAATGACCCTCTCTGCCTACATAACCATGGCCCTTCTGGAAAGTTCACTCCCAGCCACG
Seq C2 exon
CATCCTGTTGTCTCCAAAGCCCTGAGCTGCCTGGAGTCATCCTGGAAGACCATAGAACAAGAACGAAATGCCAGCTTTGTGTACACCAAGGCTTTGATGGCCTATGCTTTTGCTCTGGCGGGGAACCAGAATAAGAGAGATGAAATCCTGAAGTCACTTGATGAGGAAGCTATAAAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908_MULTIEX1-6/17=5-7
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(20.2=100)
A:
PF076789=A2M_comp=FE(9.3=100)
C2:
PF076789=A2M_comp=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGACAATGGCTGCTTCC
R:
CCAGAGCAAAAGCATAGGCCA
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types