HsaEX6065110 @ hg19
Exon Skipping
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9309771-9311172:-
Coord C1 exon
chr12:9311016-9311172
Coord A exon
chr12:9310363-9310437
Coord C2 exon
chr12:9309771-9309951
Length
75 bp
Sequences
Splice sites
3' ss Seq
AATCAATGTTGTATTCACAGGGA
3' ss Score
6.25
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
Exon sequences
Seq C1 exon
GCTCACAGCTTTTGTACTGAAGACTTTCGCCCAGGCTCGATCCTACATCTTCATTGATGAAGCACACATTACCCAATCTCTCACGTGGCTCTCCCAGATGCAGAAGGACAATGGCTGTTTCAGGAGCTCTGGGTCACTGCTCAACAATGCCATAAAG
Seq A exon
GGAGGTGTAGAAGATGAAGCGACCCTCTCCGCCTATGTTACTATTGCCCTTCTGGAAATTCCTCTCCCAGTCACT
Seq C2 exon
AACCCTATTGTTCGCAATGCCCTGTTCTGCCTGGAGTCAGCCTGGAATGTAGCAAAGGAGGGGACCCATGGGAGCCATGTCTACACCAAGGCATTGCTGGCCTATGCTTTTTCCCTACTGGGAAAGCAAAATCAGAATAGAGAAATACTGAACTCACTTGATAAGGAAGCTGTGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(20.2=100)
A:
PF076789=A2M_comp=FE(9.3=100)
C2:
PF076789=A2M_comp=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCAATCTCTCACGTGGCT
R:
GCCTTGGTGTAGACATGGCTC
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)