HsaINT0135679 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9309771-9310437:-
Coord C1 exon
chr12:9310363-9310437
Coord A exon
chr12:9309952-9310362
Coord C2 exon
chr12:9309771-9309951
Length
411 bp
Sequences
Splice sites
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
3' ss Seq
ACCACATTTTGCCTTTACAGAAC
3' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGGTGTAGAAGATGAAGCGACCCTCTCCGCCTATGTTACTATTGCCCTTCTGGAAATTCCTCTCCCAGTCACT
Seq A exon
GTAGGTACCAGCTCAATCCCATTCCCTACCATGAAAACTGTAGATTTGCTGTCTGGAATGCCACCCTGCTAAGGGTTGAGTCTCAAGTATCTTTTGGTTCAATGATGAGGGATTTCTCAGACTGATAAGCTCTTTGGTTGATGCATTAAGAGAGATTTACACTTGCCCAGTAATGCCCATAGACTATGTATCAAAACCAATCCTAAAAACAGGTTCTCTAGTCTTATTCTTTAAGACTGAACTATAAAGGGAAGAGATCGAAATATTTTTCTATTTAAATATGATGAATATCTAGCTGTCTGCCTATCTGTCTGAAATCTATTAATAACATCTGACTGTCAATATCCAGCTCTCAGCTTGCTCTGCCCTCTATTCACCCTAGTTTGACACAACCACATTTTGCCTTTACAG
Seq C2 exon
AACCCTATTGTTCGCAATGCCCTGTTCTGCCTGGAGTCAGCCTGGAATGTAGCAAAGGAGGGGACCCATGGGAGCCATGTCTACACCAAGGCATTGCTGGCCTATGCTTTTTCCCTACTGGGAAAGCAAAATCAGAATAGAGAAATACTGAACTCACTTGATAAGGAAGCTGTGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(9.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGTAGAAGATGAAGCGAC
R:
TCTTTCACAGCTTCCTTATCAAGTGA
Band lengths:
254-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)