BtaEX6024075 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101257958-101259468:+
Coord C1 exon
chr5:101257958-101258114
Coord A exon
chr5:101258499-101258573
Coord C2 exon
chr5:101259291-101259468
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCTCTGATCCTACAGGGT
3' ss Score
9.98
5' ss Seq
ACCGTATGT
5' ss Score
6.73
Exon sequences
Seq C1 exon
GCTTACTGCATTTGTGCTCAAGTCTTTTTCTCAAGCCCAGTCACACATCTTTGTGGAGGACTCGCACATCACAGACTCCCTTACCTGGCTCTCACGGAAGCAGAAGGAAAATGGTTGTTTCCAGCGCTCTGGATCATTGCTAAACAATGCTATTAAG
Seq A exon
GGTGGGGTCGATGATGAGGTAACGCTCTCTGCCTATATCACCATCGCTCTACTGGAGATGCCGCTGCTTGTCACC
Seq C2 exon
CACTCAATTGTCCGCAATGCTCTCTTCTGCCTGGAAAGGGCCTGGCAATCTGCCTCAGAGGCCCAAGGAAGTTTTGTCTATACCAAGGCGTTATTGGCCTATGCCTTCGCACTAGCAGGAGACCAAGCCAAACGAAACGAACTGCTTGAGTCACTACACAAAGAGGCTGTAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461-'42-49,'42-48,43-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(20.3=100)
A:
PF076789=A2M_comp=FE(9.4=100)
C2:
PF076789=A2M_comp=FE(23.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGTTGTTTCCAGCGCTCT
R:
TTGGCTTGGTCTCCTGCTAGT
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]