DreEX6014988 @ danRer10
Exon Skipping
Gene
ENSDARG00000078183 | A2ML1 (10 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3681081-3681626:+
Coord C1 exon
chr3:3681081-3681237
Coord A exon
chr3:3681303-3681377
Coord C2 exon
chr3:3681464-3681626
Length
75 bp
Sequences
Splice sites
3' ss Seq
AAGATGCTGCTGTGTTTTAGGGT
3' ss Score
8.08
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTTGACTACCTTTGTCATGAGGACTTTTGGCCTAGCAAGGAACTTCACCTACATAGATCCCAATGTCCTTCAGAGCGCAAAGGACTGGTTGATTGGCACGCAGGGTTCAGATGGTTGTTTTGTGCAACAGGGGACTCTGTACCACAAAGACATGAAG
Seq A exon
GGTGGGGTTGATGATAACGTAACCATGACTGGCTACATCGTTGCATCAATGCTTGAAATTGGAGTTCCAGTCACG
Seq C2 exon
GATCCTGTCATTACGAAGGCTCTGTCGTTTTTGAGGCCTCTTGTTGGGAATCTGGGAAACACCTATGTAACTGCTCTGCTGGCCTACACCTTCAGTCTGGCTGGAGAGACCAGCACTCGAGCACAGCTTTTAAATTCCTTGAGAAACACTGCCATTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078183-'31-37,'31-36,32-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.2=100)
A:
PF076789=A2M_comp=FE(10.3=100)
C2:
PF076789=A2M_comp=FE(23.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCTTCAGAGCGCAAAGG
R:
TAGGCCAGCAGAGCAGTTACA
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]