GgaEX0025941 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79195389-79201408:+
Coord C1 exon
chr1:79195389-79195443
Coord A exon
chr1:79200736-79200819
Coord C2 exon
chr1:79201232-79201408
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTACACCCTCTGGTATCAGGGA
3' ss Score
6.62
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
CCAGAGGGAGTGCTAATAGAAAAGGCTCACAGTTCCATCCTGTGTCCCAAGAAAG
Seq A exon
GGAGTCCAGCAGAGGAGTCTGTGTCCTTAACGTTGCCTCCAAATACGGTTGAAGGTTCAGTGAGAGCTACTGTCTCAGTCACTG
Seq C2 exon
GTGACCTCATGGGGACAGCACTGCAAAACTTGGACCACCTGGTGCAGATGCCCCATGGCTGTGGGGAGCAGAACATGGTACTGTTTGCCCCCATTGTCTATATGCTGCAGTACCTGGAGAAGACAAGGCAGCTGACTCCTGAGATTAAGGAGAGGGCAACAGGATTCTTGCGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-18/25=17-19
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.207 C2=0.008
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=PU(32.3=52.6)
A:
PF105694=Thiol-ester_cl=PD(64.5=69.0)
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTCCATCCTGTGTCCCA
R:
ATCTCAGGAGTCAGCTGCCTT
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event