GgaEX0025941 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75552198-75556744:+
Coord C1 exon
chr1:75552198-75552298
Coord A exon
chr1:75556148-75556231
Coord C2 exon
chr1:75556644-75556744
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTACACCCTCTGGTATCAGGGA
3' ss Score
6.62
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
TTTCTCTCCTATGTGCTCATTACTGCTACTATTGAATGCTCAACAGCCAGAGGGAGTGCTAATAGAAAAGGCTCACAGTTCCATCCTGTGTCCCAAGAAAG
Seq A exon
GGAGTCCAGCAGAGGAGTCTGTGTCCTTAACGTTGCCTCCAAATACGGTTGAAGGTTCAGTGAGAGCTACTGTCTCAGTCACTG
Seq C2 exon
GTGACCTCATGGGGACAGCACTGCAAAACTTGGACCACCTGGTGCAGATGCCCCATGGCTGTGGGGAGCAGAACATGGTACTGTTTGCCCCCATTGTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'42-38,'42-37,43-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATGCTCAACAGCCAGAGG
R:
ACAATGGGGGCAAACAGTACC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]