GgaINT0121129 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79200736-79201408:+
Coord C1 exon
chr1:79200736-79200819
Coord A exon
chr1:79200820-79201231
Coord C2 exon
chr1:79201232-79201408
Length
412 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
GTGCCTATGTTCTGTCCCAGGTG
3' ss Score
9.12
Exon sequences
Seq C1 exon
GGAGTCCAGCAGAGGAGTCTGTGTCCTTAACGTTGCCTCCAAATACGGTTGAAGGTTCAGTGAGAGCTACTGTCTCAGTCACTG
Seq A exon
GTAAGGAATTTAGTTATGATAATACTTTTCCAACAACTGTTTCTCTGAGTATAGACCTAAGAATACCCAACCCCAGAACACTCAATACTCTTTCTGAGGTTTCCGAGGCTCCAACTGCCTTGATCTTTCCATGTGTGTAGCTGAGATTCCTGGCTCCATATAACCAAAAACACTCAGAAAGGGAAAGGTCGTTCTGTTTATGGGCTTCCTCTGTCAGGATGGGAGTGTGTATAGCCCATAATGAGGGTGCAGTGAAACTGATAAGCTGACTGACCAGAGCAGCCTGCACGCTGTTGTGCTGGGGCTATCTTATTTAGCACACTACCAGAAACTGGTCACAGGTTGGAGGAGATGAATATCGAGTCCCACCAGTCACCTTCTGAGTGGTCAGAGTGCCTATGTTCTGTCCCAG
Seq C2 exon
GTGACCTCATGGGGACAGCACTGCAAAACTTGGACCACCTGGTGCAGATGCCCCATGGCTGTGGGGAGCAGAACATGGTACTGTTTGCCCCCATTGTCTATATGCTGCAGTACCTGGAGAAGACAAGGCAGCTGACTCCTGAGATTAAGGAGAGGGCAACAGGATTCTTGCGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=PD(64.5=69.0)
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCAGCAGAGGAGT
R:
GCAAGAATCCTGTTGCCCTCT
Band lengths:
255-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]