GgaINT0121127 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79194009-79195443:+
Coord C1 exon
chr1:79194009-79194130
Coord A exon
chr1:79194131-79195388
Coord C2 exon
chr1:79195389-79195443
Length
1258 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGA
5' ss Score
4.2
3' ss Seq
TACTATTGAATGCTCAACAGCCA
3' ss Score
3.32
Exon sequences
Seq C1 exon
GGTTCACGAACATCACTCTCAGCACAGAGGCCATTGCCACCAAAGAGCTCTGTGGCAAAGAGATACCATTTGTCCCAAACCAAGGACAGAAAGATACAATCACCAAACTCCTTTTAGTCCGG
Seq A exon
GTCAGACAACCTCTTCTGTTACTTAGACCTTAAAATGGACTTTGTGCAATTCCTAGTTTGGTGCAGAGTAAATTCTAGGACTTTGTCCCCTTGTAATTCAAGGTATAAAATTAGAATCTAATTGGGCTGAGCTGGGGCCTTGGAAATTTAGGAATTATATGTGTTGTCCTCCATTTCACGGCCAACTTTCTGTTTCTTCTTGTTGTGGGTCAGGGCCTCTAAACAGAAAAATCTTAAGGTATTTTTTACCCTTTTATGTTCTTCCCACCTTAACCTCTCTGCTTAATTCTTTGCCAACATTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGTGTAAAATTAGAATCTAATGGCCTGAGCTGTGGCCTTGAAATTTAGGAATTATATGTGTGTCCTCCATTTCACGCCAACTTCTGTTCTTCTGTTTGTGGTCAGGCCTCTAAACAGAAAATCTTAAGTATTTTTACCCTTTTATGTTCTTCCCACTTAACTCTCTGCTAAATCTTGCAACATTTGTTTCACAGGCATTCACAAGTTAAAATATTCTGAAAATTTCTTATCTGAAATTAAAATGATTGACTAAAATTTTTTAAATTTTTTTATTATTGGTGATTAAAAGGAGAATCTCTGGCTTGGACCAAAATTTTGTCTGTATCTATTTGTAATCCACTTTTTCTCTCCTATGTGCTCATTACTGCTACTATTGAATGCTCAACAG
Seq C2 exon
CCAGAGGGAGTGCTAATAGAAAAGGCTCACAGTTCCATCCTGTGTCCCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=PU(32.3=52.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]