HsaINT0000071 @ hg38
Intron Retention
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr12:8854128-8854831:+
Coord C1 exon
chr12:8854128-8854249
Coord A exon
chr12:8854250-8854779
Coord C2 exon
chr12:8854780-8854831
Length
530 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTGTCTCTCTTCATCGCAGCCT
3' ss Score
9.14
Exon sequences
Seq C1 exon
GTCACATTAACTTTACTATTAGTACAAAGATTCTGGACAGCAATGAACCATGTGGGGGCCAGAAGGGGTTTGTTCCCCAAAAGGGCCGAAGTGACACGCTCATCAAGCCAGTTCTCGTCAAA
Seq A exon
GTGAGTTTTCTTCAGAGGTAGAGACAGCAACCAACCGAGGGATGCTCAGCATCTCGTCTTGCTGTGAGTTAGTCTCTCACAGCAACCATACTCCAGTCCAACCAGGCAGCTTCAACTTTCTCCTTCCCTGGCCCCTTGAACATTTGCCTAATCCACACCCACGGCCTATGAAAGCACCTAAAACCCGGCACCTCATAGGCACTCAACAAATGTTAGTTTACCTAATTAAAATGTCTGTCTTCATCAATAGCTGCCTTTTTCGTCCCATCATGAAGCCCATTGTCAATCTTGCCTCTTAGAAGTTGCCTAAATGTGTCTTTGGCTCTAGCACTTGCCCAGAAAGAACTTTACAGAAAGGGCCCATCCTTGGGTTGACGCAGAGTTCTTCTGAGCTTCAGTGAGAAGCTCTTGTCTGCAGTTCTGAGGGAAGCCCTGGGGGCACAGCGAGGGGCCTCCCTTCCCTTTCCTTTAGTGCCATCCCTCCTGATGTTCATCTTTGTTGTTTTTATCTGTGTCTCTCTTCATCGCAG
Seq C2 exon
CCTGAGGGAGTCCTGGTGGAGAAGACACACAGCTCATTGCTGTGCCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535:ENST00000299698:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development