DreINT0140003 @ danRer10
Intron Retention
Gene
ENSDARG00000104200 | si:ch211-285j16.4
Description
si:ch211-285j16.4 [Source:ZFIN;Acc:ZDB-GENE-141219-32]
Coordinates
chr15:17967432-17967798:+
Coord C1 exon
chr15:17967432-17967553
Coord A exon
chr15:17967554-17967746
Coord C2 exon
chr15:17967747-17967798
Length
193 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTGTTATCCATTTATCTCAGGTG
3' ss Score
8.1
Exon sequences
Seq C1 exon
GAAAGGTGAACTTTACAGTGCGTGCCGAGGCAGTGAAGACCCGAGAACTGTGTGGCAATGAAGTGGTGACTTTGCCAGACAAAGGCAAAGTTGATACTGTGATGCAGAGCGTTCTGGTGGAG
Seq A exon
GTATGTGCATTTACTGTATTGCATGCATTTACTGTATTTAAGCAGAAAACAGGGAAAAAATAAACTTCTTTTTAATAAATAATTTTGACTTCAACTGTATATTCATTATATTTCATTTGATTCCGATTCAGTTCATTACAAATCAATGTCAGTATTGAAGGATCCTGTTGACACTGTTATCCATTTATCTCAG
Seq C2 exon
GTGGAGGGAACTAAACAGTCAGTCACTCAGAATGAGCTCATCTGCTTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104200:ENSDART00000163765:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACTTTACAGTGCGTGC
R:
CAGTTAAGCAGATGAGCTCATTCTG
Band lengths:
170-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]