BtaINT0010520 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101325567-101327284:+
Coord C1 exon
chr5:101325567-101325688
Coord A exon
chr5:101325689-101327232
Coord C2 exon
chr5:101327233-101327284
Length
1544 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTTTTTCTTTCCACCTAAAGCCT
3' ss Score
6.86
Exon sequences
Seq C1 exon
GGAATGTGAATTTCACAGTGAGTGCAGAGGCAGTGGAGTCTCAAGAGCTATGTGGGAGTGAAGTGCCTGTGGTCCCTGAGCATGGAAGGAAAGACACAATCATCAAGCCCCTGTTGGTTGAA
Seq A exon
GTAAGTAAGCCTGCTTTTTTTTTTGGATGGGTCACAATGAGTCAGGAAAAACAGTGGTGAATCCAGTTGGAGTTCCTGATTTTGGGTAAGAAGGACTAAATAATATATGATCATGTGATATTTCACAATATGATTCTCTCTTTGTCTCTCTCTCTCTCATCTTTACCTCTCTTGATTTAACTTTATAATTCCCCTCCCTTTCCCATCTATCAATTTGTCTCCTTCATATATTGCTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCATGTCCGACTCTTTGCGACCCCATGTATTGCAGCACACCAGGCCTCCGTGTCCATCACTAACTCCCGGAGTTCACCCAAACTCATGTCCATTGAGTTGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCTTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAATTCTTTGCATGAGGTGGCCGAAGTACTGGAGTTTCAGTTTTAGCATCATTCCTTCCAAAGAACACCCAGAACTGATCTCCTTTAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCAGTGCTCAACTTTCTTCACAGTCCAAGTTACACATCCATACATGATCACTGGAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTTGGGTGAACTCCAGGAGTTGGTGATGGACACGGAGGCCTGGCGTGTTGCAATTCATGGGGTCGCAAAGAGTCGGACACAACTGAGTGACTGAACTGAACTGAACTGAATCACCATCTGCAGTGACTCTGGAGCCCCAAAAAATAAAGTCTGATACTGTTTCCACTGTTTCCCCATCTATTTGCCGTGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTTTTGCTTACACTTAAACAATTTGTTTATATAATACATTTGAAAATCAGTTCCAATACTTTTCTTCATGAAGAAACCTTTAGTTCCCCTATGTCCTGAAAGTCTCTCATTTCTAACTTTTTTTCTTTCCACCTAAAG
Seq C2 exon
CCTGAAGGACTAGAGAAGGAAGTAATATTCAACTCCCTGCTTTGTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137:ENSBTAT00000006167:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]