DreINT0000011 @ danRer10
Intron Retention
Gene
ENSDARG00000008835 | A2ML1 (1 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3654878-3655123:-
Coord C1 exon
chr3:3655002-3655123
Coord A exon
chr3:3654930-3655001
Coord C2 exon
chr3:3654878-3654929
Length
72 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
ATGCATTTTGTTCCTTTTAGGCT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GAACTTTAAATGTTACTGTCAGTGGCGAGGCCAGTCCGTCCCAGGAATTGTGTGGCAATCAGGATGTGACCGTACCTTCAAGAGGACGCATTGACATAGTCACTCGAAGTCTGCTGGTTCTG
Seq A exon
GTTTGTAACTATTCTGTAGTTTTGAAAGTTGCACTCCATTGTGCATTTACTGATGCATTTTGTTCCTTTTAG
Seq C2 exon
GCTGAAGGTGTGGAAAGGACCTTCATCCGAAGTTGGTTACTCTGTCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008835:ENSDART00000021286:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTTACTGTCAGTGGCGAGG
R:
CCTTTGGACAGAGTAACCAACT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]