MmuINT0006478 @ mm9
Intron Retention
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121611445-121612462:+
Coord C1 exon
chr6:121611445-121611566
Coord A exon
chr6:121611567-121612410
Coord C2 exon
chr6:121612411-121612462
Length
844 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTCTTTTTTCTTCCCTAAAGCCT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GAAATGTGAATTTCACAGTGAGTGCAGAGGCACTGGACTCTAAGGAGCTGTGTAGGAATGAGGTGCCAGTGGTTCCTGAACGTGGAAAGAAAGACACGATCATCAAGTCCCTGCTGGTTGAA
Seq A exon
GTAAGTAAATCTGCCTACCTGATAGGAAACACTGAGGCACAAGAGCAAGCTCAGTTAAGGGGCTAATTATTTTTACAATTTCAACTCTTCAATGTTGAATAATGTACAGCCCATATAAGATTCACAGTAACATCTCTCTGTCGTCTATCATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCATCTATTATCTTCTATTACCTATTATCTATCATCTCTATTATCTATCTATCATCTATGTATCTATCATCTGTCATTTATCTACATCTCTCATCTATCTCTATTATCTATCTACCATCTATCTTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCATCTATTATCTATCTTCAATTACCTATTATCTATCATCTCTATTATTTATCTATCATCTATGTATCTATCATCTGTCATTTATCTACATCTCTCATCTATCTCTATTATCTATCTACCATCTATCTTCTATCTATCTATCTACCTATCTATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACTTATCTATTGCTCCCCATACTTCTCTATCTCTGTCCACTCTTGCTAATTATCTTCATTAATCTTCACTCATTTTCTTTTCTATCAATCCATCTTTTTCATATACTTGCAATGAATAGAATTTATTTAGATAGTGCAACAAATCCTTTTTTTCACTGTGTGGGACTCTGTGGTCCCCGAATCAACAACTCCCATATCCTGAAGGTCAGTGCAGTTCATCTTAACTTCTTTTTTCTTCCCTAAAG
Seq C2 exon
CCTGAAGGTCTAGAGAATGAAGTGACATTCAACAGTTTGCTTTGTCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-A2m:NM_175628:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: