GgaEX0025940 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79193602-79195443:+
Coord C1 exon
chr1:79193602-79193728
Coord A exon
chr1:79194009-79194130
Coord C2 exon
chr1:79195389-79195443
Length
122 bp
Sequences
Splice sites
3' ss Seq
TAAATGTGTCTTATTTTCAGGGT
3' ss Score
9.41
5' ss Seq
CGGGTCAGA
5' ss Score
4.2
Exon sequences
Seq C1 exon
ATCCAAGTGACTATGGAGGAGTTCCCACAGTTCCAGCTGAAGTCATGTGAGGGTTGTGTCTACAGCAGCTGCTTATGTGCTGGAGAAGTAAAGACATTTCTGTGGAGTGTCACAGCTGAGCGACTAG
Seq A exon
GGTTCACGAACATCACTCTCAGCACAGAGGCCATTGCCACCAAAGAGCTCTGTGGCAAAGAGATACCATTTGTCCCAAACCAAGGACAGAAAGATACAATCACCAAACTCCTTTTAGTCCGG
Seq C2 exon
CCAGAGGGAGTGCTAATAGAAAAGGCTCACAGTTCCATCCTGTGTCCCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-16/25=15-17
Average complexity
C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=33.3)
A:
NO
C2:
PF105694=Thiol-ester_cl=PU(32.3=52.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGTGACTATGGAGGAGTTCC
R:
TCTTGGGACACAGGATGGAACT
Band lengths:
178-300
Functional annotations
There are 0 annotated functions for this event