GgaINT0121126 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79193602-79194130:+
Coord C1 exon
chr1:79193602-79193728
Coord A exon
chr1:79193729-79194008
Coord C2 exon
chr1:79194009-79194130
Length
280 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TAAATGTGTCTTATTTTCAGGGT
3' ss Score
9.41
Exon sequences
Seq C1 exon
ATCCAAGTGACTATGGAGGAGTTCCCACAGTTCCAGCTGAAGTCATGTGAGGGTTGTGTCTACAGCAGCTGCTTATGTGCTGGAGAAGTAAAGACATTTCTGTGGAGTGTCACAGCTGAGCGACTAG
Seq A exon
GTGAGGAGAAGAAGGAGGTGGGGCTGAGGATCAGGGAGGGAATGGGGCCAAGGTGAGGATGCTTTATAAGGGCTGAGTGAGGAGGTTGGGTTATATGCCCTGTTAATCTAGACTACTCATCTGCATTTCTCTGAAAGTCATGGCTACTTAAAATTTAGTGCTAGGAGGTACAGAACCTCCTGTAAGTAGGGCTCCAATCAAAATTTTTGTTGCGAACAAGTGACTTCTGTTATATTAATGGGAAGCAATGTTTTCTGCACTAAATGTGTCTTATTTTCAG
Seq C2 exon
GGTTCACGAACATCACTCTCAGCACAGAGGCCATTGCCACCAAAGAGCTCTGTGGCAAAGAGATACCATTTGTCCCAAACCAAGGACAGAAAGATACAATCACCAAACTCCTTTTAGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACTATGGAGGAGTTCCCA
R:
CCGGACTAAAAGGAGTTTGGTGA
Band lengths:
244-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]