GgaEX0025940 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75551255-75552344:+
Coord C1 exon
chr1:75551255-75551355
Coord A exon
chr1:75551636-75551757
Coord C2 exon
chr1:75552244-75552344
Length
122 bp
Sequences
Splice sites
3' ss Seq
TAAATGTGTCTTATTTTCAGGGT
3' ss Score
9.41
5' ss Seq
CGGGTCAGA
5' ss Score
4.2
Exon sequences
Seq C1 exon
ACAGTTCCAGCTGAAGTCATGTGAGGGTTGTGTCTACAGCAGCTGCTTATGTGCTGGAGAAGTAAAGACATTTCTGTGGAGTGTCACAGCTGAGCGACTAG
Seq A exon
GGTTCACGAACATCACTCTCAGCACAGAGGCCATTGCCACCAAAGAGCTCTGTGGCAAAGAGATACCATTTGTCCCAAACCAAGGACAGAAAGATACAATCACCAAACTCCTTTTAGTCCGG
Seq C2 exon
CCAGAGGGAGTGCTAATAGAAAAGGCTCACAGTTCCATCCTGTGTCCCAAGAAAGGTAAAGAGATTGTTTTCTTCTTTTACTCTGCTCATCTCACCATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'40-36,'40-35,41-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTCCAGCTGAAGTCATGTG
R:
GGAATGGTGAGATGAGCAGAGT
Band lengths:
202-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]