DreEX6075785 @ danRer10
Exon Skipping
Gene
ENSDARG00000104200 | si:ch211-285j16.4
Description
si:ch211-285j16.4 [Source:ZFIN;Acc:ZDB-GENE-141219-32]
Coordinates
chr15:17970374-17978831:+
Coord C1 exon
chr15:17970374-17970455
Coord A exon
chr15:17970647-17970803
Coord C2 exon
chr15:17978757-17978831
Length
157 bp
Sequences
Splice sites
3' ss Seq
AATTTCTACTGTTTTCTCAGGCT
3' ss Score
6.01
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GCTATCAGAGAGAGCTGACATATAAGCATGGTGATGGATCTTACAGTGCTTTTGGCTCAAACGATCCTTCTGGTAACACATG
Seq A exon
GCTAACTGCATTTGTGATGAAGTCTTTTGGTGGGGCAAAGAGGTATATATTTATAGATCAGACCAGCATTGATGAGGCAAAGAATTGGCTGAGTCAGCAGCAGAAGACAAATGGCTGCTTCACCTCTGTGGGGCAACTGATCCACATTGAAATGATG
Seq C2 exon
GGTGGTGTCAATGATGAAGTCACTCTCTCTGCTTACATCACCGCAGCGCTGCTGGAGTTAGGCGTGCAGATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104200-'28-31,'28-29,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCAGAGAGAGCTGACATAT
R:
AATCTGCACGCCTAACTCCAG
Band lengths:
154-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]