GgaEX6003327 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75826067-75827707:-
Coord C1 exon
chr1:75827626-75827707
Coord A exon
chr1:75826594-75826750
Coord C2 exon
chr1:75826067-75826141
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGATTCTTGTTCACCTGTAGGCT
3' ss Score
9.57
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGTACCAGAAACAGCTTTCATACAAACACCAGGATGGGTCCTACAGCTCCTTTGGGACACGAGACAAGGAAGGAAATGTATG
Seq A exon
GCTCACTGCCTTTGTATATAAGTCATTTGCACAAGCAAGACGGTACATCTATGTTGATGAAAATGTCCAGTCTCAAACTCTGATCTGGCTGGCAAGAAAGCAGAAGTCAGATGGCTGCTTTGAAAATGCTGAGTCACATTTCAACAATGCTTTGAAG
Seq C2 exon
GGTGGTGAAGAAGGTGAATACTCCCTTACAGCCTACATTGTGGCAGCATTGTTGGAGGCTGGACACTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'29-28,'29-27,31-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.8=100)
A:
PF076789=A2M_comp=FE(20.9=100)
C2:
PF076789=A2M_comp=FE(9.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCAGAAACAGCTTTCATACA
R:
AACAGAGTGTCCAGCCTCCAA
Band lengths:
154-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]