MmuEX1017833 @ mm10
Exon Skipping
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121879300-121880906:+
Coord C1 exon
chr6:121879300-121879387
Coord A exon
chr6:121880444-121880600
Coord C2 exon
chr6:121880832-121880906
Length
157 bp
Sequences
Splice sites
3' ss Seq
CACTCTCCCTCCCCCATCAGGCT
3' ss Score
9.16
5' ss Seq
AAGGTGATC
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTTATCAGAGAGAGCTGAACTACAAACACAAGGATGGCTCCTACAGTGCCTTCGGGGATCAAAATGGCGAAAGAGAAGGAAACACTTG
Seq A exon
GCTCACAGCCTTTGTGCTCAAGTCTTTTGCCCAAGCTCGAGCCTTCATCTTCATCGATGAATCACACATCACCCATGCCTTCACCTGGCTCTCCCAAAAGCAGAAGGACAATGGCTGCTTCCGGAGCTCCGGATCATTGTTCAACAATGCCATGAAG
Seq C2 exon
GGGGGAGTAGATGATGAAATGACCCTCTCTGCCTACATAACCATGGCCCTTCTGGAAAGTTCACTCCCAGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908_MULTIEX1-5/17=4-6
Average complexity
S*
Mappability confidence:
85%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
PF076789=A2M_comp=FE(20.2=100)
C2:
PF076789=A2M_comp=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATCAGAGAGAGCTGAACTACA
R:
GTGGCTGGGAGTGAACTTTCC
Band lengths:
162-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types