BtaEX6024076 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101257067-101258573:+
Coord C1 exon
chr5:101257067-101257154
Coord A exon
chr5:101257958-101258114
Coord C2 exon
chr5:101258499-101258573
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCTTTGCTGAACAGGCT
3' ss Score
8.12
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GTTACCAAAGACAGTTGAACTATAAGCACAGTGATGGTTCTTACAGCACCTTTGGGGATCGTGATGGTAGAAGTCAGGGAAACACTTG
Seq A exon
GCTTACTGCATTTGTGCTCAAGTCTTTTTCTCAAGCCCAGTCACACATCTTTGTGGAGGACTCGCACATCACAGACTCCCTTACCTGGCTCTCACGGAAGCAGAAGGAAAATGGTTGTTTCCAGCGCTCTGGATCATTGCTAAACAATGCTATTAAG
Seq C2 exon
GGTGGGGTCGATGATGAGGTAACGCTCTCTGCCTATATCACCATCGCTCTACTGGAGATGCCGCTGCTTGTCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461-'41-48,'41-47,42-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
PF076789=A2M_comp=FE(20.3=100)
C2:
PF076789=A2M_comp=FE(9.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCAAAGACAGTTGAACTATAAGC
R:
GGTGACAAGCAGCGGCATC
Band lengths:
162-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]