GgaEX6003302 @ galGal3
Exon Skipping
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79426394-79427608:-
Coord C1 exon
chr1:79427527-79427608
Coord A exon
chr1:79426972-79427128
Coord C2 exon
chr1:79426394-79426468
Length
157 bp
Sequences
Splice sites
3' ss Seq
GCTTCATGGTTCCCTTGCAGGCT
3' ss Score
8.86
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
Exon sequences
Seq C1 exon
GCTACCAGAAGCAGCTATCATACAAACATCCTGATGGATCCTACAGCACATTTGGCATTAGAGATAAAGAAGGGAACACCTG
Seq A exon
GCTCACTGCCTTTGTGTACAAATCATTTGCAGAAGCTAGTCGCTTCATATATATTGATGACAATGTCCAGGCTCAAACCCTGATATGGCTGGCAAGAAAACAGAAGACAGATGGCTGCTTCCAAAGTACTGGGATACTTGTCAACAATGCCATGAAG
Seq C2 exon
GGAGGAGTAGAAAATGAGCTGTCACTTTCTGCCTATATCACCATTGCCTTGCTAGAAGCTGGGCACTCCGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'31-35,'31-34,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.9=100)
A:
PF076789=A2M_comp=FE(21.0=100)
C2:
PF076789=A2M_comp=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCAGAAGCAGCTATCAT
R:
ACGGAGTGCCCAGCTTCTAG
Band lengths:
153-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]