GgaEX6003327 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79467765-79469406:-
Coord C1 exon
chr1:79469325-79469406
Coord A exon
chr1:79468293-79468449
Coord C2 exon
chr1:79467765-79467845
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGATTCTTGTTCACCTGTAGGCT
3' ss Score
9.57
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGTACCAGAAACAGCTTTCATACAAACACCAGGATGGGTCCTACAGCTCCTTTGGGACACGAGACAAGGAAGGAAATGTATG
Seq A exon
GCTCACTGCCTTTGTATATAAGTCATTTGCACAAGCAAGACGGTACATCTATGTTGATGAAAATGTCCAGTCTCAAACTCTGATCTGGCTGGCAAGAAAGCAGAAGTCAGATGGCTGCTTTGAAAATGCTGAGTCACATTTCAACAATGCTTTGAAG
Seq C2 exon
CTTCAGGGTGGTGAAGAAGGTGAATACTCCCTTACAGCCTACATTGTGGCAGCATTGTTGGAGGCTGGACACTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'25-24,'25-23,26-24=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(10.8=100)
A:
PF076789=A2M_comp=FE(20.7=100)
C2:
PF076789=A2M_comp=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCAGAAACAGCTTTCATACA
R:
CTGAACAGAGTGTCCAGCCTC
Band lengths:
163-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]