DreEX0068381 @ danRer10
Exon Skipping
Gene
ENSDARG00000030967 | si:ch211-51a6.2
Description
si:ch211-51a6.2 [Source:ZFIN;Acc:ZDB-GENE-090313-118]
Coordinates
chr13:21673891-21679977:+
Coord C1 exon
chr13:21673891-21674032
Coord A exon
chr13:21677520-21677734
Coord C2 exon
chr13:21679836-21679977
Length
215 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCTTTGTCCTTTAGGGG
3' ss Score
10.89
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
ATGGAGTGTTGCGTCTGGTTGGAGCTGATAGCCCATGGGAAGGCCGTCTGGAGGTTTATCATGCTGGTGAATGGGGCACAGTGTGTGACGACAACTGGACCGGACGACATGCCCAGGTGGTGTGTCGACAGCTGGGTTATCG
Seq A exon
GGGGCGAGCTGAGGTGTCTCCAGTTGGGATGTATGGCGAGGGTACAGGAATGATCCTGCTGGATGAGGTGACCTGTGAAGGAGGAGAGAGCTCTCTGCTGGACTGTGATCATTCTCAGTGGGGTCAGCATGACTGCTCTCACAGTGAGGATGTGGGAATTCGCTGCGAAAGAGAAGGACAGAACAATGAGATCCCCGAAGTGGCTCCTGTCACAG
Seq C2 exon
GTCCGCTGGTGAGGCTGGTGGACGGAGAGAGCCGTAAGGAGGGCCGTGTGGAGGTGTTCATTAACGCTCAGTGGGGCAGTGTGTGTGACGACGGTTGGAATGACATCAATGCTCAAGTGGTCTGCAGACAGCTAGGATTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030967-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.021
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=76.7)
C2:
PF0053013=SRCR=PU(41.8=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTGTTGCGTCTGGTTG
R:
ACAAATCCTAGCTGTCTGCAGAC
Band lengths:
284-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]