GgaEX0007110 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVZ2]
Coordinates
chr6:15469993-15472338:-
Coord C1 exon
chr6:15472160-15472338
Coord A exon
chr6:15470877-15471076
Coord C2 exon
chr6:15469993-15470134
Length
200 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTTTCTTTCCTCTAGTGG
3' ss Score
9.74
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
TGGGAACCCAAAAGCCTTGTCGTGGGCTCACTATGGGCAGGGATCTGGTCCCATCCTGCTAGATGAAGTGGAGTGCTCAGGCAATGAACTCTCACTTGACCAATGCAAGAAGAGTGACTGGGGACAACAAAACTGTGACCATATTGAAGATGCTGGCGTCTCTTGTGATCCTTTCACAG
Seq A exon
TGGTCCTGCTACCCTGGCCTCTGAAGCGGACTATGCTGCTGGCCAAGGCTTTATCTTGCTGGATGATGTGGCTTGTGTGGGCACAGAGCTCTCCCTCCTGGACTGTCCCCATAGCAATTGGGGGCAGCACGACTGCTCACACGCTGAGGACGTGGGAGTTCACTGTTCTCCAGAGAGCAACACAGTCACTGGCAGCCTGG
Seq C2 exon
GACCTCCTGTGCGGCTGGTGGATGGAGAAAGCACCAAGGAGGGACGGGTTGAAGTATTCCTGAATGGACAGTGGGGCAGCGTCTGTGATGACGGCTGGACAGACAGAGATGCTACAGTAGTTTGCAGGCAACTGGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005156_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.188
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=91.8)
A:
PF0053013=SRCR=PD(57.1=82.4)
C2:
PF0053013=SRCR=PU(41.8=85.4)
Main Skipping Isoform:
ENSGALT00000008280fB3906
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTATGGGCAGGGATCTGG
R:
CTGAATCCCAGTTGCCTGCAA
Band lengths:
294-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]