DreEX6070363 @ danRer10
Exon Skipping
Gene
ENSDARG00000060680 | si:ch73-127m5.1
Description
si:ch73-127m5.1 [Source:ZFIN;Acc:ZDB-GENE-130531-25]
Coordinates
chr12:35075112-35087135:+
Coord C1 exon
chr12:35075112-35075253
Coord A exon
chr12:35077734-35077945
Coord C2 exon
chr12:35086994-35087135
Length
212 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTTTATGCAGAGG
3' ss Score
7.97
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
ATGGCGTGGTGAGACTGGTAGACGGTGATAACCCATGGGAAGGTCGTCTGGAAGTCTATCACTCCAGGGACTGGGGCACAGTGTGTGATGACAGCTGGACAGAGCCTCATGCGCAGGTGGTCTGCAGACAGCTGGGATTCAG
Seq A exon
AGGAGGTGCAGAGGTCGCCCCCGCTGGTGCATTTGGAGAAGGAACAGGTCTGATTCTGCTGGACGATGTGGAGTGTGAGGGCACTGAGAGCTCTTTGCTGGAGTGTAAACATGGTGTGTGGGGTCGACACGATTGTTCCCACAGCGAGGATGTTGGAATTCGCTGCCACAGGGTGGAAAACAATGAGGTCCCGCTGGCTCCAGAAAGTACCG
Seq C2 exon
GGCCTCTGGTTCGTCTGGCAGGTGGTGACAGTAGGAAGGAGGGCCGGGTGGAGGTGTTTCTTAATGGCGAATGGGGCAGCGTATGTGATCACGGCTGGAATGATGTCAATGCTGCCGTCGTCTGCAGACAGCTCGGATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060680-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.167
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=85.4)
A:
PF0053013=SRCR=PD(57.1=77.8)
C2:
PF0053013=SRCR=PU(41.8=85.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCGTGGTGAGACTGGTAG
R:
TTGAATCCGAGCTGTCTGCAG
Band lengths:
284-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]