GgaEX0007109 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NVZ2]
Coordinates
chr6:15469993-15472338:-
Coord C1 exon
chr6:15472160-15472338
Coord A exon
chr6:15471748-15471889
Coord C2 exon
chr6:15469993-15470134
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCTACCCCTTGCAGAGG
3' ss Score
10.12
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGGGAACCCAAAAGCCTTGTCGTGGGCTCACTATGGGCAGGGATCTGGTCCCATCCTGCTAGATGAAGTGGAGTGCTCAGGCAATGAACTCTCACTTGACCAATGCAAGAAGAGTGACTGGGGACAACAAAACTGTGACCATATTGAAGATGCTGGCGTCTCTTGTGATCCTTTCACAG
Seq A exon
AGGGCACTGTAAGGCTGACTGGTGGTCGCAGCCCCAGCGAAGGCAGGGTAGAAGTTTATTACAATGGAGACTGGGGCACAGTATGTGATGATGGCTGGACAGACCTCAGTGCCCAGGTGGTCTGCAGACAGCTGGGCTTCAG
Seq C2 exon
GACCTCCTGTGCGGCTGGTGGATGGAGAAAGCACCAAGGAGGGACGGGTTGAAGTATTCCTGAATGGACAGTGGGGCAGCGTCTGTGATGACGGCTGGACAGACAGAGATGCTACAGTAGTTTGCAGGCAACTGGGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005156_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.188
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=91.8)
A:
PF0053013=SRCR=PU(41.8=85.4)
C2:
PF0053013=SRCR=PU(41.8=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGTGGAGTGCTCAGGC
R:
CCCAGTTGCCTGCAAACTACT
Band lengths:
254-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]