RnoEX0070320 @ rn6
Exon Skipping
Gene
ENSRNOG00000015353 | Prss12
Description
serine protease 12 [Source:RGD Symbol;Acc:69238]
Coordinates
chr2:227687641-227692677:+
Coord C1 exon
chr2:227687641-227687819
Coord A exon
chr2:227689349-227689490
Coord C2 exon
chr2:227692481-227692677
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCCTTATCTCCTTATCACAGATG
3' ss Score
8.76
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
Exon sequences
Seq C1 exon
TGGCATTGCCAAAGCATGGCATCAGGCACATTTTGGGGAAGGATCTGGCCCAATATTGTTGGATGAAGTACGCTGCACTGGGAATGAGCTGTCAATTGAGCAGTGTCCAAAGAGCTCCTGGGGTGAACATAACTGTGGCCATAAAGAAGATGCCGGAGTGTCTTGTGCTCCTCTGACAG
Seq A exon
ATGGTGTCATCAGACTGTCAGGAGGGAAAAGTGTCCATGAAGGTCGCTTGGAGGTGTACTATAGGGGACAGTGGGGAACAGTTTGTGATGATGGCTGGACTGAAATGAATACATACGTGGCTTGTCGACTGCTGGGATTTAA
Seq C2 exon
ATATGGCAAACAGTCCTCTGTGAACCACTTTGAAGGCAGCAGCAGGCCCATATGGCTGGATGACGTCAGCTGCTCAGGAAAAGAAGCCAGCTTCATTCAGTGTTCCAGGAGACAGTGGGGAAGGCATGACTGCAGCCATAGGGAAGATGTGGGCCTCACCTGCTACCCTGACAGTGATGGTCATAGGCTTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015353-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=91.8)
A:
PF0053013=SRCR=PU(42.3=85.4)
C2:
PF0053013=SRCR=PD(56.7=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGGAATGAGCTGTCAA
R:
TCTTCCCTATGGCTGCAGTCA
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]