BtaEX6029907 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020705 | PRSS12
Description
Bos taurus protease, serine, 12 (neurotrypsin, motopsin) (PRSS12), mRNA. [Source:RefSeq mRNA;Acc:NM_001193222]
Coordinates
chr6:7975561-7981659:+
Coord C1 exon
chr6:7975561-7975739
Coord A exon
chr6:7978340-7978481
Coord C2 exon
chr6:7981463-7981659
Length
142 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCCTTCTTGTCGCAGATG
3' ss Score
11.19
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
Exon sequences
Seq C1 exon
TGGCATTGCCAAAGCATGGAATCAGGCGTATTTTGGGGAAGGGTCTGGTCCAGTAATGTTGGATGAGGTACGCTGCACCGGGAATGAGCTTTCTATTGAGCAGTGTCCAAAGAGTTCCTGGGGAGAGCATAACTGTGACCATAAAGAAGATGCTGGAGTGTCCTGTACCCCTCTAACAG
Seq A exon
ATGGCGTCATCAGACTTGCAGGTGGTAAAGGCAGCCACGAGGGTCGCCTGGAGGTGTATCACAGAGGACAGTGGGGGACTGTCTGTAATGACGGCTGGACTGATCTTAATACCTATGTGGTTTGCCGACAGCTGGGATTTAA
Seq C2 exon
ATACGGCAAACAAGCCTCTGCAAACCACTTTGAAGAGAGCATGGGACCCATATGGCTGGATGGGGTCAGTTGCTCGGGAAAGGAAGCCAGTTTCCTTCAGTGTTCGCAGAGACCCTGGGGAAGTCATGACTGCAGCCATCGGGAAGATGTTGGCATCTCCTGCTACCCCGGCGGGAATGGATTCAGATTGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020705-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(57.1=91.8)
A:
PF0053013=SRCR=PU(42.3=85.4)
C2:
PF0053013=SRCR=PD(56.7=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGGGTCTGGTCCAGTAA
R:
GGTCTCTGCGAACACTGAAGG
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]